/*
    <LEA, a fast Long and high Error read Alignment program>
    Copyright (C) <2014>  <Ruhua Jiang>

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

#include <stdio.h>
#include <string.h>

#include "bntseq.h"
#include "lea_index.h"

int main(int argc, char *argv[])
{
	int ret;

	if (strcmp(argv[1], "aln") == 0);
		//ret = lea_map(argv[2], argv[3],options);
	if (strcmp(argv[1], "index") == 0){
		ret = lea_index(argc-1, argv+1);
	}
	fflush(stdout);
	return 0;
}




